Kompetitive allele specific PCR
term

Kompetitive allele specific PCR (KASP) is a homogenous, fluorescence-based genotyping variant of polymerase chain reaction. It is based on allele-specific oligo extension and fluorescence resonance energy transfer for signal generation.
A single-nucleotide polymorphism (SNP) occurs when a single nucleotide in a DNA sequence differs between members of the same species or a paired chromosome. SNPs work as molecular markers that help locate genes associated with disease and are used for genotype sequencing.
Genotyping by next generation sequencing using SNPs is expensive, time-consuming, and has some missing data. There are many other SNP techniques that can be used depending on the purpose of the research considering throughput, data turnaround time, ease of use, performance (sensitivity, reliability, reproducibility, accuracy) flexibility, requirements, and cost. For the highest throughput for large scale studies, it is best to choose multiplexed chip-based technology. Multiplex technologies generate anywhere from 100 to over a million SNPs per run but are not economical to use for small to moderate numbers of SNPs. For a smaller number of SNPs, a uniplex assay like KASP can be used.
Methodology
There are three components that are critical to the KASP assay: 1) a purified DNA sample, 2) two allele-specific forward primers, and 3) a common reverse primer.
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This entry incorporates text from “Kompetitive allele specific PCR” on English Wikipedia. Contributors are listed in the page history. Text is available under the Creative Commons Attribution-ShareAlike 4.0 License. Selected authority identifiers and statements are retrieved from Wikidata under CC0; their references and qualifiers remain part of the verification path.